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Evolution des Virus Entomopathogènes

Bézier A, J Thézé, F Gavory, J Gaillard, J Poulain, JM Drezen, EA Herniou. (2015). The genome of the nucleopolyhedrosis causing virus from Tipula oleracea (ToNV) sheds new lights into the Nudiviridae family. J. Virol. doi:10.1128/JVI.02884-14

Romiguier J., Gayral P., Ballenghien M., Bernard A., Cahais V., Chenuil A., Chiari Y., Dernat R., Faivre N., Loire E., Lourenco J.M., Nabholz B., Roux C., Tsagkogeorga G., Weber A., Weinert L.A., Belkhir K., Bierne N., Glémin S., Galtier N. Comparative population genomics in animals uncovers the determinants of genetic diversity. 2014 Nature doi:10.1038/nature13685.

Gilbert C, A Chateigner, L Ernenwein, V Barbe, A Bézier, EA Herniou & R Cordaux (2014) Viruses as vectors of horizontal transfer of transposons between animals. Nature Comms. 5:3348.  http://www.nature.com/ncomms/2014/140221/ncomms4348/full/ncomms4348.html 

Thézé J, O Cabodevilla, L Palma, T Williams, P Caballero & EA Herniou. (2014) Genomic and functional diversity in European Spodoptera exigua multiple nucleopolyhedrovirus isolates. J. Gen. Virol. 95: 2297–2309. doi:10.1099/vir.0.064766-0 

Romiguier J, J. Lourenco, P. Gayral, N. Faivre, L.A. Weinert, S. Ravel, M. Ballenghien, V. Cahais, A. Bernard, E. Loire, L. Keller, N. Galtier. Population genomics of eusocial insects: the costs of a vertebrate-like effective population size. Journal of Evolutionary Biology.  DOI: 10.1111/jeb.12331.

Lapègue S, E. Harrang, S. Heurtebise, E. Flahauw, C. Donnadieu, P. Gayral, M. Ballenghien, L. Genestout, L. Barbotte, R. Mahla, P. Haffray, C. Klopp. Development of SNP genotyping arrays in two shellfish species. Molecular Ecology Resources. 2014 Jul;14(4):820-30.

Herniou EA, E Huguet, J Thézé, A Bézier, G Periquet & JM Drezen (2013) When parasitic wasps hijacked viruses: genomic and functional evolution of polydnaviruses. Phil. Trans. Royal Soc. B.  368:20130051 http://rstb.royalsocietypublishing.org/content/368/1626/20130051

Bézier A, F Louis, S Jancek, G Periquet, J Thézé, G Gyapay, K Musset, J Lesobre, P Lenoble, C Dupuy, D Gundersen-Rindal, EA Herniou & JM Drezen (2013). Functional Endogenous Viral Elements (EVEs) in the genome of the parasitoid wasp Cotesia congregata: insights into the evolutionary dynamics of bracoviruses. Phil. Trans. Royal Soc. B. 368:20130047 http://rstb.royalsocietypublishing.org/content/368/1626/20130047

Gayral P, J. Melo-Fereira, S. Glémin, N. Bierne, M. Carneiro, B. Nabholz, J. Lourenco, P.C. Alves, M. Ballenghien, N. Faivre, K. Belkhir, V. Cahais, E. Loire, A. Bernard, N. Galtier. Reference-free population genomics from Next-Generation transcriptome data and the vertebrate-invertebrate gap. Plos Genetics 9(4) 2013. IF: 

Thézé J, J Takatsuka, Z Li, J Gallais, D Doucet, B Arif, M Nakai & EA Herniou (2013) New insights into the evolution of Entomopoxvirinae from the complete genome sequences of four entomopoxviruses infecting Adoxophyes honmai, Choristoneura biennis, Choristoneura rosaceana and Mythimna separata. J. Virol. 87:7992-8003 http://jvi.asm.org/content/87/14/7992.full.pdf

Jancek S, A Bézier, P Gayral, C Paillusson, L Kaiser, S Dupas, BP Le Ru, V Barbe, G Periquet, JM Drezen and EA Herniou (2013) Adaptive selection on bracovirus genomes drives the specialization of Cotesia parasitoid wasps. PLoS ONE 8(5): e64432. http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0064432#pone-0064432-g004

Chabannes M,  F. -C. Baurens, P. -O. Duroy , S. Sidibe-Bocs, M. -S. Vernerey, M. Rodier-Goud, V. Barbe, P. Gayral, and M. -L Iskra-Caruana. Three infectious viral species laying in wait in the banana genome. Journal of Virology - published ahead of print 29 May 2013 , doi:10.1128/JVI.00899-13. 

Cahais V, P. Gayral, G. Tsagkogeorga, J. Melo-Ferreira, M. Ballenghien, L. Weinert, Y. Chiari, K. Belkhir, V. Ranwez, N. Galtier. Reference-free transcriptome assembly in non-model animals from next generation sequencing data. Molecular Ecology Resources2012 –12(5) 834-845. 

Carneiro M, F. W. Albert, J. Melo-Ferreira, N. Galtier, P. Gayral, J. A. Blanco-Aguiar, R. Villafuerte, M. W. Nachman and N. Ferrand. Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome.Molecular Biology and Evolution. 2012. 29(7): 1837-1849.

Thézé J, A Bézier, G Periquet, JM Drezen & EA Herniou (2011).  Paleozoic origin of insect large dsDNA viruses. PNAS 108:15931-15935 http://www.pnas.org/content/108/38/15931.long
P. Gayral, L. Weinert, Y. Chiari, G. Tsagkogeorga, M. Ballenghien and N. Galtier. Next-generation sequencing of transcriptomes: a guide to RNA isolation in non-model animals. Molecular Ecology Resources - 2011 2011 11(4):650-661.

Herniou EA & Jehle JA (2007). Baculovirus phylogeny and evolution. Curr. Drug Targets 8: 1043-1050. DOI: http://dx.doi.org/10.2174/138945007782151306

Herniou EA, JA Olszewski, DR O'Reilly & JS Cory (2004). Ancient coevolution of baculoviruses and their insect hosts. J. Virol. 78: 3244-3251 http://jvi.asm.org/content/78/7/3244.full
Herniou EA, JA Olszewski, JS Cory & DR O'Reilly (2003). The genome sequence and evolution of baculoviruses. Ann. Rev. Entomol. 48: 211-34. DOI: 10.1146/annurev.ento.48.091801.112756

Herniou EA, T Luque, X Chen, JM Vlak, D Winstanley, JS Cory & DR O'Reilly (2001). Use of whole genome sequence data to infer baculovirus phylogeny. J. Virol. 75: 8117-8126. http://jvi.asm.org/content/75/17/8117.full?sid=adb10626-96de-42a7-94fc-535580215c1b


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